Education and Training

Professional Experience

Selected Publications

(full list in PubMed)

  • Meta-analysis and Consolidation of Farnesoid X Receptor Chromatin Immunoprecipitation Sequencing Data Across Different Species and Conditions. Jungwirth E, Panzitt K, Marschall HU, Thallinger GG*, Wagner M*. Hepatol Commun., 2021;5(10):1721-1736. [PubMed]
  • A Map of Mass Spectrometry-based in silico Fragmentation Prediction and Compound Identification in Metabolomics. Krettler CA*, Thallinger GG*. Brief Bioinform., 2021;22(6):bbab073. [PubMed]
  • Genome sequences of Tropheus moorii and Petrochromis trewavasae, two eco-morphologically divergent cichlid fishes endemic to Lake Tanganyika. Fischer C, Koblmüller S, Börger C, Michelitsch G, Trajanoski S, Guelly C, Schlötterer C, Thallinger GG*, Sturmbauer C*. Sci Rep., 2021;11(1):4309. [PubMed]
  • Identification and Quantification of Oxidized Lipids in LC-MS Lipidomics Data. Krettler CA*, Hartler J, Thallinger GG*. Stud Health Technol Inform., 2020;271:39-48. [PubMed]
  • FXR-dependent Rubicon induction impairs autophagy in models of human cholestasis. Panzitt K, Jungwirth E, Krones E, Lee JM, Pollheimer M, Thallinger GG, Kolb-Lenz D, Xiao R, Thorell A, Trauner M, Fickert P, Marschall HU, Moore DD, Wagner M. J Hepatol., 2020;72(6):1122-1131. [PubMed]
  • Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data. Pucher BM, Zeleznik OA*, Thallinger GG*. Brief Bioinform., 2019;20(2):671-681. [PubMed]
  • The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites. Schäffer S*, Koblmüller S, Klymiuk I, Thallinger GG*. Sci Rep., 2018;8(1):7558. [PubMed]
  • Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A. Nat Commun., 2018;9(1):3159. [PubMed]
  • MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics. Bueschl C, Kluger B, Neumann NKN, Doppler M, Maschietto V, Thallinger GG, Meng-Reiterer J, Krska R, Schuhmacher R. Anal Chem., 2017;89(17):9518-9526. [PubMed]
  • Deciphering lipid structures based on platform-independent decision rules. Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC*, Thallinger GG*. Nat Methods., 2017;14(12):1171-1174. [PubMed]
  • Inferring expressed genes by whole-genome sequencing of plasma DNA. Ulz P, Thallinger GG, Auer M, Graf R, Kashofer K, Jahn SW, Abete L, Pristauz G, Petru E, Geigl JB, Heitzer E, Speicher MR. Nat Genet., 2016;48(10):1273-1278. [PubMed]
  • A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research. Bueschl C, Kluger B, Lemmens M, Adam G, Wiesenberger G, Maschietto V, Marocco A, Strauss J, Bodi S, Thallinger GG, Krska R, Schuhmacher R. Metabolomics., 2014;10(4):754-769. [PubMed]
  • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Appl Environ Microbiol., 2009;75(23):7537-7541. [PubMed]
Gerhard Thallinger
Dipl.-Ing. Dr.techn.
+43 316 873 - 5343
+43 316 873 105343