Florian Wieser, Sarah Stryeck, Konrad Lang, Christoph Hahn, Gerhard Thallinger, Julia Feichtinger, Philipp Hack, Manfred Stepponat, Nirav Merchant, Stefanie Lindstaedt and Gustav Oberdorfer A local platform for user-friendly FAIR data management and reproducible analytics Show publication in PURE
Xenia Lainscsek and Leila Taher Purely Sequence based prediction of contact maps and classification of chromosomal compartments with DDA-DNA Proceedings Annual Meeting of the Austrian Society for Biomedical Engineering 2021 99-102 Show publication in PURE
Michelle Almeida da Paz and Leila Taher T3E: TRANSPOSABLE ELEMENT ENRICHMENT ESTIMATOR Proceedings Annual Meeting of the Austrian Society for Biomedical Engineering 2021 95-98 Show publication in PURE
Chang-Feng Chu, Florian Sabath, Silvia Fibi-Smetana, Shan Sun, Rupert Öllinger, Elfriede Noeßner, Ying-Yin Chao, Linus Rinke, Elena Winheim, Roland Rad, Anne B. Krug, Leila Taher and Christina E. Zielinski Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities Show publication in PURE
Nicolai K H Barth, Lifei Li and Leila Taher Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome Show publication in PURE
Katrin Panzitt, Emilian Jungwirth, Elisabeth Krones, Jae Man Lee, Marion Pollheimer, Gerhard G Thallinger, Dagmar Kolb-Lenz, Rui Xiao, Anders Thorell, Michael Trauner, Peter Fickert, Hanns-Ulrich Marschall, David D Moore and Martin Wagner FXR-dependent Rubicon induction impairs autophagy in models of human cholestasis Show publication in PURE
Izabela Borek, René Köffel, Julia Feichtinger, Melanie Spies, Elisabeth Glitzner-Zeis, Mathias Hochgerner, Tommaso Sconocchia, Corinna Krump, Carmen Tam-Amersdorfer, Christina Passegger, Theresa Benezeder, Julia Tittes, Anna Redl, Clemens Painsi, Gerhard G Thallinger, Peter Wolf, Georg Stary, Maria Sibilia and Herbert Strobl BMP7 aberrantly induced in the psoriatic epidermis instructs inflammation-associated Langerhans cells Show publication in PURE
Lifei Li, Nicolai K H Barth, Christian Pilarsky and Leila Taher Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome Show publication in PURE
Eva Lentsch, Lifei Li, Susanne Pfeffer, Arif B Ekici, Leila Taher, Christian Pilarsky and Robert Grützmann CRISPR/Cas9-Mediated Knock-Out of KrasG12D Mutated Pancreatic Cancer Cell Lines Show publication in PURE
H. Thiemeyer, L. Taher, J. T. Schille, L. Harder, S. O. Hungerbuehler, R. Mischke, M. Hewicker-Trautwein, Z. Kiełbowicz, B. Brenig, E. Schütz, Julia Beck, H. Murua Escobar and I. Nolte Suitability of ultrasound-guided fine-needle aspiration biopsy for transcriptome sequencing of the canine prostate Show publication in PURE
Nadine N Hauer, Bernt Popp, Leila Taher, Carina Vogl, Perundurai S Dhandapany, Christian Büttner, Steffen Uebe, Heinrich Sticht, Fulvia Ferrazzi, Arif B Ekici, Alessandro De Luca, Patrizia Klinger, Cornelia Kraus, Christiane Zweier, Antje Wiesener, Rami Abou Jamra, Erdmute Kunstmann, Anita Rauch, Dagmar Wieczorek, Anna-Marie Jung, Tilman R Rohrer, Martin Zenker, Helmuth-Guenther Doerr, André Reis and Christian T Thiel Evolutionary conserved networks of human height identify multiple Mendelian causes of short stature Show publication in PURE
Lifei Li, Nicolai K H Barth, Eva Hirth and Leila Taher Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units Show publication in PURE
Magnus Sandberg, Leila Taher, Jianxin Hu, Brian L Black, Alex S Nord and John L R Rubenstein Genomic analysis of transcriptional networks directing progression of cell states during MGE development Show publication in PURE
Peter-Louis Plaumann, Johannes Schmidpeter, Marlis Dahl, Leila Taher and Christian Koch A Dispensable Chromosome Is Required for Virulence in the Hemibiotrophic Plant Pathogen Colletotrichum higginsianum Show publication in PURE
Leila Taher, Julia Beck, Wen Liu, Catrin Roolf, Jan T Soller, Barbara C Rütgen, Sabine E Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak, Georg Fuellen, Christian Junghanss, Bertram Brenig, Ingo Nolte, Ekkehard Schütz and Hugo Murua Escobar Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation Show publication in PURE
Bin Liu, Hai Yang, Leila Taher, Axel Denz, Robert Grützmann, Christian Pilarsky and Georg F Weber Identification of Prognostic Biomarkers by Combined mRNA and miRNA Expression Microarray Analysis in Pancreatic Cancer Show publication in PURE
Shanni N Silberberg, Leila Taher, Susan Lindtner, Magnus Sandberg, Alex S Nord, Daniel Vogt, Gabriel L Mckinsey, Renee Hoch, Kartik Pattabiraman, Dongji Zhang, Jose L Ferran, Aleksandar Rajkovic, Olga Golonzhka, Carol Kim, Hongkui Zeng, Luis Puelles, Axel Visel and John L R Rubenstein Subpallial Enhancer Transgenic Lines Show publication in PURE
Sherry Freiesleben, Michael Hecker, Uwe Klaus Zettl, Georg Fuellen and Leila Taher Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis Show publication in PURE
Nitesh Kumar Singh, Mathias Ernst, Volkmar Liebscher, Georg Fuellen and Leila Taher Revealing complex function, process and pathway interactions with high-throughput expression and biological annotation data Show publication in PURE
Martin J Pfeiffer, Leila Taher, Hannes Drexler, Yutaka Suzuki, Wojciech Makałowski, Caroline Schwarzer, Bingyuan Wang, Georg Fuellen and Michele Boiani Differences in embryo quality are associated with differences in oocyte composition Show publication in PURE
Leila Taher, Martin J Pfeiffer and Georg Fuellen Bioinformatics approaches to single-blastomere transcriptomics Show publication in PURE
Lamia'a Bahnassawy, Thanneer M Perumal, Laura Gonzalez-Cano, Anna-Lena Hillje, Leila Taher, Wojciech Makalowski, Yutaka Suzuki, Georg Fuellen, Antonio del Sol and Jens Christian Schwamborn TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability Show publication in PURE
Takashi Furusawa, Mark Rochman, Leila Taher, Emilios K Dimitriadis, Kunio Nagashima, Stasia Anderson and Michael Bustin Chromatin decompaction by the nucleosomal binding protein HMGN5 impairs nuclear sturdiness Show publication in PURE
Mathias Ernst, Raed Abu Dawud, Andreas Kurtz, Gunnar Schotta, Leila Taher and Georg Fuellen Comparative computational analysis of pluripotency in human and mouse stem cells Show publication in PURE
Kartik Pattabiraman, Olga Golonzhka, Susan Lindtner, Alex S Nord, Leila Taher, Renee Hoch, Shanni N Silberberg, Dongji Zhang, Bin Chen, HongKui Zeng, Len A Pennacchio, Luis Puelles, Axel Visel and John L R Rubenstein Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex Show publication in PURE
Leila Taher, Robin P Smith, Mee J Kim, Nadav Ahituv and Ivan Ovcharenko Sequence signatures extracted from proximal promoters can be used to predict distal enhancers Show publication in PURE
Nitesh Kumar Singh, Dirk Repsilber, Volkmar Liebscher, Leila Taher and Georg Fuellen Identifying genes relevant to specific biological conditions in time course microarray experiments Show publication in PURE
Nicole M Collette, Cristal S Yee, Deepa Murugesh, Aimy Sebastian, Leila Taher, Nicholas W Gale, Aris N Economides, Richard M Harland and Gabriela G Loots Sost and its paralog Sostdc1 coordinate digit number in a Gli3-dependent manner Show publication in PURE
Robin P Smith, Leila Taher, Rupali P Patwardhan, Mee J Kim, Fumitaka Inoue, Jay Shendure, Ivan Ovcharenko and Nadav Ahituv Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model Show publication in PURE
Axel Visel, Leila Taher, Hani Girgis, Dalit May, Olga Golonzhka, Renee V Hoch, Gabriel L McKinsey, Kartik Pattabiraman, Shanni N Silberberg, Matthew J Blow, David V Hansen, Alex S Nord, Jennifer A Akiyama, Amy Holt, Roya Hosseini, Sengthavy Phouanenavong, Ingrid Plajzer-Frick, Malak Shoukry, Veena Afzal, Tommy Kaplan, Arnold R Kriegstein, Edward M Rubin, Ivan Ovcharenko, Len A Pennacchio and John L R Rubenstein A high-resolution enhancer atlas of the developing telencephalon Show publication in PURE
Grzegorz M Burzynski, Xylena Reed, Leila Taher, Zachary E Stine, Takeshi Matsui, Ivan Ovcharenko and Andrew S McCallion Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control Show publication in PURE
Brian W Busser, Leila Taher, Yongsok Kim, Terese Tansey, Molly J Bloom, Ivan Ovcharenko and Alan M Michelson A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis Show publication in PURE
Leila Taher, Leelavati Narlikar and Ivan Ovcharenko CLARE Show publication in PURE
Leila Taher, Nicole M Collette, Deepa Murugesh, Evan Maxwell, Ivan Ovcharenko and Gabriela G Loots Global gene expression analysis of murine limb development Show publication in PURE
Leila Taher, David M McGaughey, Samantha Maragh, Ivy Aneas, Seneca L Bessling, Webb Miller, Marcelo A Nobrega, Andrew S McCallion and Ivan Ovcharenko Genome-wide identification of conserved regulatory function in diverged sequences Show publication in PURE
David Martin, Cristina Pantoja, Ana Fernández Miñán, Christian Valdes-Quezada, Eduardo Moltó, Fuencisla Matesanz, Ozren Bogdanović, Elisa de la Calle-Mustienes, Orlando Domínguez, Leila Taher, Mayra Furlan-Magaril, Antonio Alcina, Susana Cañón, María Fedetz, María A Blasco, Paulo S Pereira, Ivan Ovcharenko, Félix Recillas-Targa, Lluís Montoliu, Miguel Manzanares, Roderic Guigó, Manuel Serrano, Fernando Casares and José Luis Gómez-Skarmeta Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes Show publication in PURE
Mark Rochman, Leila Taher, Toshihiro Kurahashi, Srujana Cherukuri, Vladimir N Uversky, David Landsman, Ivan Ovcharenko and Michael Bustin Effects of HMGN variants on the cellular transcription profile Show publication in PURE
Uffe Hellsten, Richard M Harland, Michael J Gilchrist, David Hendrix, Jerzy Jurka, Vladimir Kapitonov, Ivan Ovcharenko, Nicholas H Putnam, Shengqiang Shu, Leila Taher, Ira L Blitz, Bruce Blumberg, Darwin S Dichmann, Inna Dubchak, Enrique Amaya, John C Detter, Russell Fletcher, Daniela S Gerhard, David Goodstein, Tina Graves, Igor V Grigoriev, Jane Grimwood, Takeshi Kawashima, Erika Lindquist, Susan M Lucas, Paul E Mead, Therese Mitros, Hajime Ogino, Yuko Ohta, Alexander V Poliakov, Nicolas Pollet, Jacques Robert, Asaf Salamov, Amy K Sater, Jeremy Schmutz, Astrid Terry, Peter D Vize, Wesley C Warren, Dan Wells, Andrea Wills, Richard K Wilson, Lyle B Zimmerman, Aaron M Zorn, Robert Grainger, Timothy Grammer, Mustafa K Khokha, Paul M Richardson and Daniel S Rokhsar The genome of the Western clawed frog Xenopus tropicalis Show publication in PURE