2022
Veronika Schusterbauer, Jasmin E. Fischer, Sarah Gangl, Lisa Schenzle, Claudia Rinnofner, Martina Geier, Christian Sailer, Anton Glieder and Gerhard G. Thallinger Whole Genome Sequencing Analysis of Effects of CRISPR/Cas9 in Komagataella phaffii: A Budding Yeast in Distress Publikation in PURE anzeigen
Michelle Almeida da Paz and Leila Taher T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data Publikation in PURE anzeigen
Michael Frech, Yasunori Omata, Angelika Schmalzl, Stefan Wirtz, Leila Taher, Georg Schett, Mario M Zaiss and Kerstin Sarter Btn2a2 Regulates ILC2-T Cell Cross Talk in Type 2 Immune Responses Publikation in PURE anzeigen
Eva-Maria Packeiser, Leila Taher, Weibo Kong, Mathias Ernst, Julia Beck, Marion Hewicker-Trautwein, Bertram Brenig, Ekkehard Schütz, Hugo Murua Escobar and Ingo Nolte RNA-seq of nine canine prostate cancer cell lines reveals diverse therapeutic target signatures Publikation in PURE anzeigen
Eva-Maria Pferschy-Wenzig, Sabine Ortmann, Atanas G Atanasov, Klara Hellauer, Jürgen Hartler, Olaf Kunert, Markus Gold-Binder, Angela Ladurner, Elke H Heiß, Simone Latkolik, Yi-Min Zhao, Pia Raab, Marlene Monschein, Nina Trummer, Bola Samuel, Sara Crockett, Jian-Hua Miao, Gerhard G Thallinger, Valery Bochkov, Verena M Dirsch and Rudolf Bauer Characterization of Constituents with Potential Anti-Inflammatory Activity in Chinese Lonicera Species by UHPLC-HRMS Based Metabolite Profiling Publikation in PURE anzeigen
Sayantanee Dutta, Jennifer Moritz, Gudrun Pregartner, Gerhard G Thallinger, Ilona Brandstätter, Karin Lind, Simin Rezania, Freya Lyssy, Andreas Reinisch, Armin Zebisch, Andrea Berghold, Albert Wölfler and Heinz Sill Comparison of acute myeloid leukemia and myelodysplastic syndromes with TP53 aberrations Publikation in PURE anzeigen
Tadeja Kuret, Mojca Frank-Bertoncelj, Katja Lakota, Polona Žigon, Gerhard G Thallinger, Andreja N Kopitar, Saša Čučnik, Matija Tomšič, Alojzija Hočevar and Snežna Sodin-Šemrl From Active to Non-active Giant Cell Arteritis Publikation in PURE anzeigen
2021
Emiliana Weiss, Heloisa S. Andrade, Juliana Rodrigues Lara, Andreia S. Souza, Michelle Almeida da Paz, Thalitta H. A. Lima, Iane O. P. Porto, Nayane S. B. Silva, Camila F. Bannwart Castro, Rejane M. T. Grotto, Eduardo A. Donadi, Celso T. Mendes-Junior and Erick C. Castelli KIR2DL4 genetic diversity in a Brazilian population sample: implications for transcription regulation and protein diversity in samples with different ancestry backgrounds Publikation in PURE anzeigen
Florian Wieser, Sarah Stryeck, Konrad Lang, Christoph Hahn, Gerhard Thallinger, Julia Feichtinger, Philipp Hack, Manfred Stepponat, Nirav Merchant, Stefanie Lindstaedt and Gustav Oberdorfer A local platform for user-friendly FAIR data management and reproducible analytics Publikation in PURE anzeigen
Xenia Lainscsek and Leila Taher Purely Sequence based prediction of contact maps and classification of chromosomal compartments with DDA-DNA Proceedings Annual Meeting of the Austrian Society for Biomedical Engineering 2021 99-102 Publikation in PURE anzeigen
Michelle Almeida da Paz and Leila Taher T3E: TRANSPOSABLE ELEMENT ENRICHMENT ESTIMATOR Proceedings Annual Meeting of the Austrian Society for Biomedical Engineering 2021 95-98 Publikation in PURE anzeigen
Chang-Feng Chu, Florian Sabath, Silvia Fibi-Smetana, Shan Sun, Rupert Öllinger, Elfriede Noeßner, Ying-Yin Chao, Linus Rinke, Elena Winheim, Roland Rad, Anne B. Krug, Leila Taher and Christina E. Zielinski Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities Publikation in PURE anzeigen
Oliver Maier, Stefan M Spann, Daniela Pinter, Thomas Gattringer, Nicole Hinteregger, Gerhard G Thallinger, Christian Enzinger, Josef Pfeuffer, Kristian Bredies and Rudolf Stollberger Non-linear fitting with joint spatial regularization in Arterial Spin Labeling Publikation in PURE anzeigen
Heike Thiemeyer, Leila Taher, Jan Torben Schille, Eva-Maria Packeiser, Lisa K Harder, Marion Hewicker-Trautwein, Bertram Brenig, Ekkehard Schütz, Julia Beck, Ingo Nolte and Hugo Murua Escobar An RNA-Seq-Based Framework for Characterizing Canine Prostate Cancer and Prioritizing Clinically Relevant Biomarker Candidate Genes Publikation in PURE anzeigen
Weibo Kong, Sina Sender, Leila Taher, Simon Villa-Perez, Yixuan Ma, Anett Sekora, Barbara C. Ruetgen, Bertram Brenig, Julia Beck, Ekkehard Schuetz, Christian Junghanss, Ingo Nolte and Hugo Murua Escobar BTK and PI3K Inhibitors Reveal Synergistic Inhibitory Anti-Tumoral Effects in Canine Diffuse Large B-Cell Lymphoma Cells Publikation in PURE anzeigen
Emilian Jungwirth, Katrin Panzitt, Hanns-Ulrich Marschall, Gerhard G Thallinger and Martin Wagner Meta-analysis and Consolidation of Farnesoid X Receptor Chromatin Immunoprecipitation Sequencing Data Across Different Species and Conditions Publikation in PURE anzeigen
C Fischer, S Koblmüller, C Börger, G Michelitsch, S Trajanoski, C Schlötterer, C Guelly, G G Thallinger and C Sturmbauer Genome sequences of Tropheus moorii and Petrochromis trewavasae, two eco-morphologically divergent cichlid fishes endemic to Lake Tanganyika Publikation in PURE anzeigen
Leila Taher, Steffen Israel, Hannes C A Drexler, Wojciech Makalowski, Yutaka Suzuki, Georg Fuellen and Michele Boiani The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice Publikation in PURE anzeigen
2020
Andreia S. Souza, Paulin Sonon, Michelle Almeida da Paz, Leonidas Tokplonou, Thalitta H. A. Lima, Iane O. P. Porto, Heloisa S. Andrade, Nayane S. B. Silva, Luciana C. Veiga-Castelli, Maria Luiza G. Oliveira, Ibrahim Abiodoun Sadissou, Juliana Doblas Massaro, Kabirou A. Moutairou, Eduardo A. Donadi, Achille Massougbodji, Andre Garcia, Moudachirou Ibikounle, Diogo Meyer, Audrey Sabbagh, Celso T. Mendes-Junior, David Courtin and Erick C. Castelli HLA-C genetic diversity and evolutionary insights in two samples from Brazil and Benin Publikation in PURE anzeigen
Nicolai K H Barth, Lifei Li and Leila Taher Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome Publikation in PURE anzeigen
Katrin Panzitt, Emilian Jungwirth, Elisabeth Krones, Jae Man Lee, Marion Pollheimer, Gerhard G Thallinger, Dagmar Kolb-Lenz, Rui Xiao, Anders Thorell, Michael Trauner, Peter Fickert, Hanns-Ulrich Marschall, David D Moore and Martin Wagner FXR-dependent Rubicon induction impairs autophagy in models of human cholestasis Publikation in PURE anzeigen
Izabela Borek, René Köffel, Julia Feichtinger, Melanie Spies, Elisabeth Glitzner-Zeis, Mathias Hochgerner, Tommaso Sconocchia, Corinna Krump, Carmen Tam-Amersdorfer, Christina Passegger, Theresa Benezeder, Julia Tittes, Anna Redl, Clemens Painsi, Gerhard G Thallinger, Peter Wolf, Georg Stary, Maria Sibilia and Herbert Strobl BMP7 aberrantly induced in the psoriatic epidermis instructs inflammation-associated Langerhans cells Publikation in PURE anzeigen
2019
Thalitta H. A. Lima, Andreia S. Souza, Iane O. P. Porto, Michelle Almeida da Paz, Luciana C. Veiga-Castelli, Maria Luiza G. Oliveira, Eduardo A. Donadi, Diogo Meyer, Audrey Sabbagh, Celso T. Mendes-Junior and Erick C. Castelli HLA-A promoter, coding, and 3′UTR sequences in a Brazilian cohort, and their evolutionary aspects Publikation in PURE anzeigen
Lifei Li, Nicolai K H Barth, Christian Pilarsky and Leila Taher Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome Publikation in PURE anzeigen
Eva Lentsch, Lifei Li, Susanne Pfeffer, Arif B Ekici, Leila Taher, Christian Pilarsky and Robert Grützmann CRISPR/Cas9-Mediated Knock-Out of KrasG12D Mutated Pancreatic Cancer Cell Lines Publikation in PURE anzeigen
H. Thiemeyer, L. Taher, J. T. Schille, L. Harder, S. O. Hungerbuehler, R. Mischke, M. Hewicker-Trautwein, Z. Kiełbowicz, B. Brenig, E. Schütz, Julia Beck, H. Murua Escobar and I. Nolte Suitability of ultrasound-guided fine-needle aspiration biopsy for transcriptome sequencing of the canine prostate Publikation in PURE anzeigen
Nadine N Hauer, Bernt Popp, Leila Taher, Carina Vogl, Perundurai S Dhandapany, Christian Büttner, Steffen Uebe, Heinrich Sticht, Fulvia Ferrazzi, Arif B Ekici, Alessandro De Luca, Patrizia Klinger, Cornelia Kraus, Christiane Zweier, Antje Wiesener, Rami Abou Jamra, Erdmute Kunstmann, Anita Rauch, Dagmar Wieczorek, Anna-Marie Jung, Tilman R Rohrer, Martin Zenker, Helmuth-Guenther Doerr, André Reis and Christian T Thiel Evolutionary conserved networks of human height identify multiple Mendelian causes of short stature Publikation in PURE anzeigen
2018
Erick C. Castelli, Michelle Almeida da Paz, Andreia S. Souza, Jaqueline Ramalho and Celso Teixeira Mendes-Junior Hla-mapper: An application to optimize the mapping of HLA sequences produced by massively parallel sequencing procedures Publikation in PURE anzeigen
Cintia C. Alves, Luisa K. P. Arruda, Fabiola R. Oliveira, Juliana D. Massaro, Beatriz J. Aquino, Michelle Almeida da Paz, Erick C. Castelli, Celso T. Mendes-Junior and Eduardo A. Donadi Human leukocyte antigen-G 3’ untranslated region polymorphisms are associated with asthma severity Publikation in PURE anzeigen
Lifei Li, Nicolai K H Barth, Eva Hirth and Leila Taher Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units Publikation in PURE anzeigen
Magnus Sandberg, Leila Taher, Jianxin Hu, Brian L Black, Alex S Nord and John L R Rubenstein Genomic analysis of transcriptional networks directing progression of cell states during MGE development Publikation in PURE anzeigen
Peter-Louis Plaumann, Johannes Schmidpeter, Marlis Dahl, Leila Taher and Christian Koch A Dispensable Chromosome Is Required for Virulence in the Hemibiotrophic Plant Pathogen Colletotrichum higginsianum Publikation in PURE anzeigen
Leila Taher, Julia Beck, Wen Liu, Catrin Roolf, Jan T Soller, Barbara C Rütgen, Sabine E Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak, Georg Fuellen, Christian Junghanss, Bertram Brenig, Ingo Nolte, Ekkehard Schütz and Hugo Murua Escobar Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation Publikation in PURE anzeigen
Bin Liu, Hai Yang, Leila Taher, Axel Denz, Robert Grützmann, Christian Pilarsky and Georg F Weber Identification of Prognostic Biomarkers by Combined mRNA and miRNA Expression Microarray Analysis in Pancreatic Cancer Publikation in PURE anzeigen
2017
Erick C. Castelli, Petroula Gerasimou, Michelle Almeida da Paz, Jaqueline Ramalho, Iane O. P. Porto, Thalitta H. A. Lima, Andreia S. Souza, Luciana C. Veiga-Castelli, Cristhianna V. A. Collares, Eduardo A. Donadi, Celso T. Mendes-Junior and Paul Costeas HLA-G variability and haplotypes detected by massively parallel sequencing procedures in the geographicaly distinct population samples of Brazil and Cyprus Publikation in PURE anzeigen
2016
Shanni N Silberberg, Leila Taher, Susan Lindtner, Magnus Sandberg, Alex S Nord, Daniel Vogt, Gabriel L Mckinsey, Renee Hoch, Kartik Pattabiraman, Dongji Zhang, Jose L Ferran, Aleksandar Rajkovic, Olga Golonzhka, Carol Kim, Hongkui Zeng, Luis Puelles, Axel Visel and John L R Rubenstein Subpallial Enhancer Transgenic Lines Publikation in PURE anzeigen
Sherry Freiesleben, Michael Hecker, Uwe Klaus Zettl, Georg Fuellen and Leila Taher Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis Publikation in PURE anzeigen
Nitesh Kumar Singh, Mathias Ernst, Volkmar Liebscher, Georg Fuellen and Leila Taher Revealing complex function, process and pathway interactions with high-throughput expression and biological annotation data Publikation in PURE anzeigen
2015
Martin J Pfeiffer, Leila Taher, Hannes Drexler, Yutaka Suzuki, Wojciech Makałowski, Caroline Schwarzer, Bingyuan Wang, Georg Fuellen and Michele Boiani Differences in embryo quality are associated with differences in oocyte composition Publikation in PURE anzeigen
Leila Taher, Martin J Pfeiffer and Georg Fuellen Bioinformatics approaches to single-blastomere transcriptomics Publikation in PURE anzeigen
Lamia'a Bahnassawy, Thanneer M Perumal, Laura Gonzalez-Cano, Anna-Lena Hillje, Leila Taher, Wojciech Makalowski, Yutaka Suzuki, Georg Fuellen, Antonio del Sol and Jens Christian Schwamborn TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability Publikation in PURE anzeigen
Takashi Furusawa, Mark Rochman, Leila Taher, Emilios K Dimitriadis, Kunio Nagashima, Stasia Anderson and Michael Bustin Chromatin decompaction by the nucleosomal binding protein HMGN5 impairs nuclear sturdiness Publikation in PURE anzeigen
Mathias Ernst, Raed Abu Dawud, Andreas Kurtz, Gunnar Schotta, Leila Taher and Georg Fuellen Comparative computational analysis of pluripotency in human and mouse stem cells Publikation in PURE anzeigen
2014
Kartik Pattabiraman, Olga Golonzhka, Susan Lindtner, Alex S Nord, Leila Taher, Renee Hoch, Shanni N Silberberg, Dongji Zhang, Bin Chen, HongKui Zeng, Len A Pennacchio, Luis Puelles, Axel Visel and John L R Rubenstein Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex Publikation in PURE anzeigen
2013
Leila Taher, Robin P Smith, Mee J Kim, Nadav Ahituv and Ivan Ovcharenko Sequence signatures extracted from proximal promoters can be used to predict distal enhancers Publikation in PURE anzeigen
Nitesh Kumar Singh, Dirk Repsilber, Volkmar Liebscher, Leila Taher and Georg Fuellen Identifying genes relevant to specific biological conditions in time course microarray experiments Publikation in PURE anzeigen
Nicole M Collette, Cristal S Yee, Deepa Murugesh, Aimy Sebastian, Leila Taher, Nicholas W Gale, Aris N Economides, Richard M Harland and Gabriela G Loots Sost and its paralog Sostdc1 coordinate digit number in a Gli3-dependent manner Publikation in PURE anzeigen
Robin P Smith, Leila Taher, Rupali P Patwardhan, Mee J Kim, Fumitaka Inoue, Jay Shendure, Ivan Ovcharenko and Nadav Ahituv Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model Publikation in PURE anzeigen
Axel Visel, Leila Taher, Hani Girgis, Dalit May, Olga Golonzhka, Renee V Hoch, Gabriel L McKinsey, Kartik Pattabiraman, Shanni N Silberberg, Matthew J Blow, David V Hansen, Alex S Nord, Jennifer A Akiyama, Amy Holt, Roya Hosseini, Sengthavy Phouanenavong, Ingrid Plajzer-Frick, Malak Shoukry, Veena Afzal, Tommy Kaplan, Arnold R Kriegstein, Edward M Rubin, Ivan Ovcharenko, Len A Pennacchio and John L R Rubenstein A high-resolution enhancer atlas of the developing telencephalon Publikation in PURE anzeigen
2012
Grzegorz M Burzynski, Xylena Reed, Leila Taher, Zachary E Stine, Takeshi Matsui, Ivan Ovcharenko and Andrew S McCallion Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control Publikation in PURE anzeigen
Brian W Busser, Leila Taher, Yongsok Kim, Terese Tansey, Molly J Bloom, Ivan Ovcharenko and Alan M Michelson A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis Publikation in PURE anzeigen
Leila Taher, Leelavati Narlikar and Ivan Ovcharenko CLARE Publikation in PURE anzeigen
2011
Leila Taher, Nicole M Collette, Deepa Murugesh, Evan Maxwell, Ivan Ovcharenko and Gabriela G Loots Global gene expression analysis of murine limb development Publikation in PURE anzeigen
Leila Taher, David M McGaughey, Samantha Maragh, Ivy Aneas, Seneca L Bessling, Webb Miller, Marcelo A Nobrega, Andrew S McCallion and Ivan Ovcharenko Genome-wide identification of conserved regulatory function in diverged sequences Publikation in PURE anzeigen
David Martin, Cristina Pantoja, Ana Fernández Miñán, Christian Valdes-Quezada, Eduardo Moltó, Fuencisla Matesanz, Ozren Bogdanović, Elisa de la Calle-Mustienes, Orlando Domínguez, Leila Taher, Mayra Furlan-Magaril, Antonio Alcina, Susana Cañón, María Fedetz, María A Blasco, Paulo S Pereira, Ivan Ovcharenko, Félix Recillas-Targa, Lluís Montoliu, Miguel Manzanares, Roderic Guigó, Manuel Serrano, Fernando Casares and José Luis Gómez-Skarmeta Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes Publikation in PURE anzeigen
Mark Rochman, Leila Taher, Toshihiro Kurahashi, Srujana Cherukuri, Vladimir N Uversky, David Landsman, Ivan Ovcharenko and Michael Bustin Effects of HMGN variants on the cellular transcription profile Publikation in PURE anzeigen
2010
Uffe Hellsten, Richard M Harland, Michael J Gilchrist, David Hendrix, Jerzy Jurka, Vladimir Kapitonov, Ivan Ovcharenko, Nicholas H Putnam, Shengqiang Shu, Leila Taher, Ira L Blitz, Bruce Blumberg, Darwin S Dichmann, Inna Dubchak, Enrique Amaya, John C Detter, Russell Fletcher, Daniela S Gerhard, David Goodstein, Tina Graves, Igor V Grigoriev, Jane Grimwood, Takeshi Kawashima, Erika Lindquist, Susan M Lucas, Paul E Mead, Therese Mitros, Hajime Ogino, Yuko Ohta, Alexander V Poliakov, Nicolas Pollet, Jacques Robert, Asaf Salamov, Amy K Sater, Jeremy Schmutz, Astrid Terry, Peter D Vize, Wesley C Warren, Dan Wells, Andrea Wills, Richard K Wilson, Lyle B Zimmerman, Aaron M Zorn, Robert Grainger, Timothy Grammer, Mustafa K Khokha, Paul M Richardson and Daniel S Rokhsar The genome of the Western clawed frog Xenopus tropicalis Publikation in PURE anzeigen