Publications

2020

Barnabas Daru, Klaus Peter Schliep and Piyal Karunarathne phyloregion Show publication in PURE

Javier Fernández-López, M. Teresa Telleria, Margarita Dueñas, Mara Laguna-Castro, Klaus Peter Schliep and María P. Martín Linking morphological and molecular sources to disentangle the case of Xylodon australis Show publication in PURE

Birgit Wiltschi, Tomislav Cernava, Alexander Dennig, Meritxell Galindo, Martina Geier, Steffen Gruber, Marianne Haberbauer, Petra Heidinger, Enrique Herrero Acero, Regina Kratzer, Christiane Luley-Goedl, Christina A Müller, Julia Pitzer, Doris Ribitsch, Michael Sauer, Katharina Schmölzer, Wolfgang Schnitzhofer, Christoph W Sensen, Jung Soh, Kerstin Steiner, Christoph K Winkler, Margit Winkler and Tamara Wriessnegger Enzymes revolutionize the bioproduction of value-added compounds Show publication in PURE

Elisabeth Ullrich, Petra Heidinger, Jung Soh, Laura Villanova, Stefan Grabuschnig, Thorsten Bachler, Elisabeth Hirschböck, Sara Sánchez-Heredero, Barry Ford, Maria Sensen, Ingund Rosales Rodriguez, Daniel Schwendenwein, Peter Neumeister, Christoph J Zurl, Robert Krause, Johannes Lorenz Khol and Christoph W Sensen Evaluation of Host-based Molecular Markers for the Early Detection of Human Sepsis Show publication in PURE

Kristin M. Winchell, Klaus Peter Schliep, D. Luke Mahler and Liam J. Revell Phylogenetic Signal And Evolutionary Correlates Of Urban Tolerance In A Widespread Neotropical Lizard Clade Show publication in PURE

Mihai-Silviu Tomescu, Deidre Davids, Matthew DuPlessis, Barbara Darnhofer, Ruth Birner-Gruenberger, Robert Archer, Daniel Schwendenwein, Gerhard Thallinger, Margit Winkler and Karl Rumbold High-throughput in-field bioprospecting for cyanogenic plants and hydroxynitrile lyases Show publication in PURE

Stefan Grabuschnig, Jung Soh, Petra Heidinger, Thorsten Bachler, Elisabeth Hirschböck, Ingund Rosales Rodriguez, Daniel Schwendenwein and Christoph W Sensen Circulating cell-free DNA is predominantly composed of retrotransposable elements and non-telomeric satellite DNA Show publication in PURE

Christoph A Krettler, Jürgen Hartler and Gerhard G Thallinger Identification and Quantification of Oxidized Lipids in LC-MS Lipidomics Data Show publication in PURE

Stefan Grabuschnig, Abel Jacobus Bronkhorst, Stefan Holdenrieder, Ingund Rosales Rodriguez, Klaus Peter Schliep, Daniel Schwendenwein, Vida Ungerer and Christoph Wilhelm Sensen Putative Origins of Cell-Free DNA in Humans: A Review of Active and Passive Nucleic Acid Release Mechanisms Show publication in PURE

Francesco Carraro, Miriam de Jesus Velasquez Hernandez, Efwita Astria, Weibin Liang, Liam Twight, Chiara Parise, M. Ge, Zhehao Huang, Raffaele Ricco, Xiandong Zou, Laura Villanova, Oliver Kappe, Christian Doonan and Paolo Falcaro Phase dependent encapsulation and release profile of ZIF-based biocomposites Show publication in PURE

2019

Nils Hoffmann, Joel Rein, Timo Tobias Sachsenberg, Jürgen Hartler, Kenneth Haug, Gerhard Mayer, Oliver Alka, Saravanan Dayalan, Jake Thomas Midwinter Pearce, Philippe Rocca-Serra, Da Qi, Martin Eisenacher, Yasset Perez-Riverol, Juan Antonio Vizcaíno, Reza M Salek, Steffen Neumann and Andrew R Jones mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics Show publication in PURE

Tomislav Cernava, Armin Erlacher, Jung Soh, Christoph W Sensen, Martin Grube and Gabriele Berg Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.) Show publication in PURE

Leen Assil Companioni, Sandy Schmidt, Petra Heidinger, Helmut Schwab and Robert Kourist Hydrogen-driven cofactor regeneration for stereoselective whole-cell C=C bond reduction in Cupriavidus necator Show publication in PURE

Leen Assil Companioni, Sandy Schmidt, Petra Heidinger, Helmut Schwab and Robert Kourist Hetero- and autotrophically driven C=C bond reduction in recombinant C. necator Show publication in PURE

Nils Hoffmann, Jürgen Hartler and Robert Ahrends jmzTab-M: A Reference Parser, Writer and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard Show publication in PURE

Gyöngyi Cinege, Zita Lerner, Lilla B Magyar, Bálint Soós, Renáta Tóth, Ildikó Kristó, Péter Vilmos, Gábor Juhász, Attila L Kovács, Zoltán Hegedűs, Christoph W Sensen, Éva Kurucz and István Andó Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid Zaprionus indianus Show publication in PURE

Katrin Pansy, Julia Feichtinger, Barbara Ehall, Barbara Uhl, Miriam Sedej, David Roula, Beata Pursche, Axel Wolf, Manuel Zoidl, Elisabeth Steinbauer, Verena Gruber, Hildegard T Greinix, Katharina T Prochazka, Gerhard G Thallinger, Akos Heinemann, Christine Beham-Schmid, Peter Neumeister, Tanja M Wrodnigg, Karoline Fechter and Alexander Ja Deutsch The CXCR4-CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro Show publication in PURE

Emilian Jungwirth, Katrin Panzitt, Hanns-Ulrich Marschall, Martin Wagner and Gerhard G Thallinger A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data Show publication in PURE

Blaž Burja, Julia Feichtinger, Katja Lakota, Gerhard G Thallinger, Snezna Sodin-Semrl, Tadeja Kuret, Žiga Rotar, Rok Ješe, Polona Žigon, Saša Čučnik, Polonca Mali, Sonja Praprotnik, Matija Tomšič and Alojzija Hočevar Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients Show publication in PURE

Tadeja Kuret, Blaž Burja, Julia Feichtinger, Gerhard G Thallinger, Mojca Frank-Bertoncelj, Katja Lakota, Polona Žigon, Snezna Sodin-Semrl, Saša Čučnik, Matija Tomšič and Alojzija Hočevar Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies Show publication in PURE

Bettina M Pucher, Oana A Zeleznik and Gerhard G Thallinger Comparison and evaluation of integrative methods for the analysis of multilevel omics data Show publication in PURE

2018

P V Tomazic, L Liesinger, B Pucher, G G Thallinger, A Leitner, S Spoerk, C Gerstenberger, D Lang-Loidolt and R Birner-Gruenberger Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season Show publication in PURE

Tamara Tomin, Katarina Fritz, Juergen Gindlhuber, Linda Waldherr, Bettina Pucher, Gerhard G Thallinger, Daniel K Nomura, Matthias Schittmayer and Ruth Birner-Gruenberger Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells Show publication in PURE

Katrin Panzitt, Martin Wagner and Gerhard Thallinger Bioinformatic Analysis of FXR related ChIP-seq data Show publication in PURE

Gerhard Thallinger, Bettina Pucher, Natascha Fladischer and Oana Alina Zeleznik Dimension Reduction for the Integrative Analysis of Multilevel Omics Data Proceedings of SIAM ALA 2018 Show publication in PURE

Thomas Vogl, Lukas Sturmberger, Pia C Fauland, Patrick Hyden, Jasmin Elgin Fischer, Christian Schmid, Gerhard G Thallinger, Martina Geier and Anton Glieder Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors Show publication in PURE

B Burja, T Kuret, S Sodin-Semrl, K Lakota, Ž Rotar, R Ješe, K Mrak-Poljšak, P Žigon, G G Thallinger, J Feichtinger, S Čučnik, M Tomšič, S Praprotnik and A Hočevar A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods Show publication in PURE

Maximilian Malek and Christoph W Sensen Instant Feedback Rapid Prototyping for GPU-Accelerated Computation, Manipulation, and Visualization of Multidimensional Data Show publication in PURE

Tomislav Cernava, Ines Aschenbrenner, Jung Soh, Christoph Wilhelm Sensen, Martin Grube and Gabriele Berg Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota Show publication in PURE

Erika Iveth Cedillo-Gonzálaz, Virginia Barbieri, Letiticia M. Torres-Martínez, Paolo Falcaro, Isaías Juárez-Ramírez, Laura Villanova, Monica Montecchi and Luca Pasquali Influence of domestic and environmental weathering in the self-cleaning performance and durability of TiO2 photocatalytic coatings Show publication in PURE

Julia J Unterluggauer, Katharina Prochazka, Peter V Tomazic, Heinrich J Huber, Rita Seeboeck, Karoline Fechter, Elisabeth Steinbauer, Verena Gruber, Julia Feichtinger, Martin Pichler, Marc A Weniger, Ralf Küppers, Heinz Sill, Rudolf Schicho, Peter Neumeister, Christine Beham-Schmid, Alexander J A Deutsch and Johannes Haybaeck Expression profile of translation initiation factor eIF2B5 in diffuse large B-cell lymphoma and its correlation to clinical outcome Show publication in PURE

Karoline Fechter, Julia Feichtinger, Katharina Prochazka, Julia Judith Unterluggauer, Katrin Pansy, Elisabeth Steinbauer, Martin Pichler, Johannes Haybaeck, Andreas Prokesch, Hildegard T Greinix, Christine Beham-Schmid, Peter Neumeister, Gerhard G Thallinger and Alexander J A Deutsch Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival Show publication in PURE

Bhupesh K Prusty, Nitish Gulve, Sheila Govind, Gerhard R F Krueger, Julia Feichtinger, Lee Larcombe, Richard Aspinall, Dharam V Ablashi and Carla T Toro Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders Show publication in PURE

Iker Irisarri, Pooja Singh, Stephan Koblmüller, Julián Torres-Dowdall, Frederico Henning, Paolo Franchini, Christoph Fischer, Alan R Lemmon, Emily Moriarty Lemmon, Gerhard G Thallinger, Christian Sturmbauer and Axel Meyer Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes Show publication in PURE

Sylvia Schäffer, Stephan Koblmüller, Ingeborg Klymiuk and Gerhard G Thallinger The mitochondrial genome of the oribatid mite Paraleius leontonychus Show publication in PURE

Giulia Speziali, Laura Liesinger, Juergen Gindlhuber, Christina Leopold, Bettina Pucher, Jessica Brandi, Annalisa Castagna, Tamara Tomin, Petra Krenn, Gerhard G Thallinger, Oliviero Olivieri, Nicola Martinelli, Dagmar Kratky, Matthias Schittmayer, Ruth Birner-Gruenberger and Daniela Cecconi Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells Show publication in PURE

2017

Katja Lakota, Julia Feichtinger, Blaž Burja, Tadeja Kuret, Polona Žigon, Žiga Rotar, Rok Ješe, Snezna Sodin-Semrl, Saša Čučnik, Gerhard G Thallinger, Matija Tomšič and Alojzija Hočevar Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients Annals of the Rheumatic Diseases 219 Show publication in PURE

Holly Stolterfoht, Daniel Schwendenwein, Christoph Wilhelm Sensen, Florian Rudroff and Margit Winkler Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes Show publication in PURE

Alexander Triebl, Jürgen Hartler, M. Trötzmüller and Harald C. Köfeler Lipidomics: Prospects from a technological perspective Show publication in PURE

Alexander Triebl, M. Trötzmüller, Jürgen Hartler, Tatjana Stojakovic and Harald C. Köfeler Lipidomics by ultrahigh performance liquid chromatography-high resolution mass spectrometry and its application to complex biological samples Show publication in PURE

Laura Liesinger, Jürgen Gindlhuber, Bettina Pucher, Gerhard Thallinger and Ruth Birner-Gruenberger Proteome-wide impact of oleic and palmitic acid induced steatosis in human liver cells Show publication in PURE

Petra Krenn, Laura Liesinger, Bettina Pucher, Matthias Schittmayer, Gerhard Thallinger, Jürgen Cox and Ruth Birner-Gruenberger The role of protein-phosphorylation in lipolysis Show publication in PURE

Jürgen Gindlhuber, Barbara Darnhofer, Bettina Pucher, Tamara Tomin, Gerhard Thallinger and Ruth Birner-Gruenberger Mitochondrial fragmentation in fatty liver Show publication in PURE

Jung Soh and Christoph Wilhelm Sensen Unravelling the Bauplan of life: The DNA sequencing revolutionMighty Microbes218 Show publication in PURE

Jürgen Hartler, Alexander Triebl, Andreas Ziegl, Martin Trötzmüller, Gerald N Rechberger, Oana Alina Zeleznik, Kathrin A Zierler, Federico Torta, Amaury Cazenave-Gassiot, Markus R Wenk, Alexander Fauland, Craig E Wheelock, Aaron M Armando, Oswald Quehenberger, Qifeng Zhang, Michael JO Wakelam, Guenter Haemmerle, Friedrich Spener, Harald C Köfeler and Gerhard G Thallinger Deciphering lipid structures based on platform-independent decision rules Show publication in PURE

Martin Trötzmüller, Alexander Triebl, Amra Ajsic, Jürgen Hartler, Harald Köfeler and Werner Regittnig Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry Show publication in PURE

Josch K Pauling, Martin Hermansson, Jürgen Hartler, Klaus Christiansen, Sandra F Gallego, Bing Peng, Robert Ahrends and Christer S Ejsing Proposal for a common nomenclature for fragment ions in mass spectra of lipids Show publication in PURE

Elisa Lanfranchi, Tea Pavkov-Keller, Eva-Maria Koehler, Matthias Diepold, Kerstin Steiner, Barbara Darnhofer, Jürgen Hartler, Tom Van Den Bergh, Henk-Jan Joosten, Mandana Gruber-Khadjawi, Gerhard G Thallinger, Ruth Birner-Gruenberger, Karl Gruber, Margit Winkler and Anton Glieder Erratum Show publication in PURE

Bettina Halwachs, Nandhitha Madhusudhan, Robert Krause, R Henrik Nilsson, Christine Moissl-Eichinger, Christoph Högenauer, Gerhard G Thallinger and Gregor Gorkiewicz Critical Issues in Mycobiota Analysis Show publication in PURE

Christoph Bueschl, Bernhard Kluger, Nora K N Neumann, Maria Doppler, Valentina Maschietto, Gerhard G Thallinger, Jacqueline Meng-Reiterer, Rudolf Krska and Rainer Schuhmacher MetExtract II Show publication in PURE

Ingeborg Klymiuk, Ceren Bilgilier, Alexander Stadlmann, Jakob Thannesberger, Marie-Theres Kastner, Christoph Högenauer, Andreas Püspök, Susanne Biowski-Frotz, Christiane Schrutka-Kölbl, Gerhard G Thallinger and Christoph Steininger The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori Show publication in PURE

Jürgen Hartler, Alexander Triebl, Andreas Ziegl, Martin Trötzmüller, Gerald N Rechberger, Oana Alina Zeleznik, Kathrin A Zierler, Federico Torta, Amaury Cazenave-Gassiot, Markus R Wenk, Alexander Fauland, Craig E Wheelock, Aaron M Armando, Oswald Quehenberger, Qifeng Zhang, Michael JO Wakelam, Guenter Haemmerle, Friedrich Spener, Harald C Köfeler and Gerhard G Thallinger Deciphering lipid structures based on platform-independent decision rules Show publication in PURE

Alexander J A Deutsch, Beate Rinner, Martin Pichler, Katharina Prochazka, Katrin Pansy, Marco Bischof, Karoline Fechter, Stefan Hatzl, Julia Feichtinger, Kerstin Wenzl, Marie-Therese Frisch, Verena Stiegelbauer, Andreas Prokesch, Anne Krogsdam, Heinz Sill, Gerhard G Thallinger, Hildegard T Greinix, Chenguang Wang, Christine Beham-Schmid and Peter Neumeister NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes Show publication in PURE

Julia Feichtinger, Christoph Fischer, Inmaculada Hernandez, Heena Dhiman, Nicole Borth and Gerhard Thallinger Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome Show publication in PURE

Julia Feichtinger, Christoph Fischer, Inmaculada Hernández López, Nicole Borth and Gerhard Thallinger Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome Show publication in PURE

Elisabeth Ullrich, Petra Heidinger, Christoph Wilhelm Sensen and R. Krause Circulating Nucleic Acids as Early Diagnostic Markers for Sepsis Show publication in PURE

Petra Heidinger, Thorsten Bachler, Jung Soh, Laura Villanova, Stefan Grabuschnig and Christoph Wilhelm Sensen Circulating Nucleic Acids as Early Diagnostic Markers Show publication in PURE

2016

Tamara Tomin, Katarina Fritz, Bettina Pucher, Matthias Schittmayer, Barbara Darnhofer and Ruth Birner-Gruenberger ATGL and cancer: when genomics meets proteomics Show publication in PURE

2015

Martin Grube, Tomislav Cernava, J. Soh, S. Fuchs, Ines Aschenbrenner, C. Lassek, U Wegener, K Riedel, Christoph Wilhelm Sensen and Gabriele Berg Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics Show publication in PURE

2013

Klaus Peter Schliep, A Couto, C Pinho and D Posada Species tree and population size estimation of Iberian an North Adrican Podarcis Show publication in PURE

2012

Cédric Bicep, Klaus Peter Schliep and Ian Misner Gene Networks calssification on topological properties and applications Show publication in PURE

2011

Jessica W Leigh, Klaus Schliep, Philippe Lopez and Eric Bapteste Let them fall where they may Show publication in PURE

Julie Beauregard-Racine, Cédric Bicep, Klaus Schliep, Philippe Lopez, François-Joseph Lapointe and Eric Bapteste Of woods and webs Show publication in PURE

Yan Boucher, Otto X Cordero, Alison Takemura, Dana E Hunt, Klaus Schliep, Eric Bapteste, Philippe Lopez, Cheryl L Tarr and Martin F Polz Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations Show publication in PURE

2010

M. Xiao, T. Do, L. Helmick, Jung Soh, A. Fisk, J.D. Fisk, G. Robertson and Christoph Wilhelm Sensen A novel MRI visualization tool for white matter pathology in multiple sclerosis Show publication in PURE